Widom, Jonathan: search on Z-Library

Fundraising September 15, 2024 – October 1, 2024 About fundraising

The world's largest scientific articles store. 70,000,000+ articles for free.

Fundraising September 15, 2024 – October 1, 2024

Z-Library is one of the largest online libraries in the world that contains over 17,000,000 books and 84,837,000 articles. We aim to make literature accessible to everyone. Today (September 15, 2024) we've started additional fundraising to project maintenance and development.

Also UNLIMITED downloads (for 31 days after the day of making donation) are available for ALL contributors who will donate during the fundraising period till October 1, 2024.

About fundraisingRead more

Make a donation

1

Molecular biology: DNA bending and kinking

Widom, Jonathan

Journal:

Year:

1984

File:

PDF, 301 KB

1984

2

The DNA-encoded nucleosome organization of a eukaryotic genome

Kaplan, Noam, Moore, Irene K., Fondufe-Mittendorf, Yvonne, Gossett, Andrea J., Tillo, Desiree, Field, Yair, LeProust, Emily M., Hughes, Timothy R., Lieb, Jason D., Widom, Jonathan

Journal:

Year:

2008

Language:

english

File:

PDF, 578 KB

english, 2008

3

High flexibility of DNA on short length scales probed by atomic force microscopy

Wiggins, Paul A., van der Heijden, Thijn, Moreno-Herrero, Fernando, Spakowitz, Andrew, Phillips, Rob, Widom, Jonathan, Dekker, Cees, Nelson, Philip C.

Journal:

Nature Nanotechnology

Year:

2006

Language:

english

File:

PDF, 276 KB

english, 2006

4

What does physics have to do with cancer?

Michor, Franziska, Liphardt, Jan, Ferrari, Mauro, Widom, Jonathan

Journal:

Nature Reviews Cancer

Year:

2011

Language:

english

File:

PDF, 1.30 MB

english, 2011

5

Chromosomes and gene expression mechanisms: Theory and experiment

Barbara Meyer, Jonathan Widom

Journal:

Current Opinion in Genetics & Development

Year:

2005

Language:

english

File:

PDF, 65 KB

english, 2005

6

H2A.Z-Mediated Localization of Genes at the Nuclear Periphery Confers Epigenetic Memory of Previous Transcriptional State

Brickner, Donna Garvey, Cajigas, Ivelisse, Fondufe-Mittendorf, Yvonne, Ahmed, Sara, Lee, Pei-Chih, Widom, Jonathan, Brickner, Jason H., Mistelli, Tom

Journal:

Year:

2007

Language:

english

File:

PDF, 709 KB

english, 2007

7

Bent DNA for gene regulation and DNA packaging

Journal:

Year:

1985

Language:

english

File:

PDF, 544 KB

english, 1985

8

Biological consequences of tightly bent DNA: The other life of a macromolecular celebrity

Hernan G. Garcia, Paul Grayson, Lin Han, Mandar Inamdar, Jané Kondev, Philip C. Nelson, Rob Phillips, Jonathan Widom, Paul A. Wiggins

Journal:

Year:

2007

Language:

english

File:

PDF, 481 KB

english, 2007

9

Challenges and opportunities for training the next generation of biophysicists: Perspectives of the directors of the Molecular Biophysics Training Program at Northwestern University

Francis Neuhaus, Jonathan Widom, Robert MacDonald, Theodore Jardetzky, Ishwar Radhakrishnan

Journal:

Year:

2008

Language:

english

File:

PDF, 71 KB

english, 2008

10

Monomolecular condensation of λ-DNA induced by cobalt hexammine

Jonathan Widom, Robert L. Baldwin

Journal:

Year:

1983

Language:

english

File:

PDF, 1.33 MB

english, 1983

11

Inhibition of cation-induced DNA condensation by intercalating dyes

Jonathan Widom, Robert L. Baldwin

Journal:

Year:

1983

Language:

english

File:

PDF, 625 KB

english, 1983

12

ChemInform Abstract: Synthesis and Biological Evaluation of Inhibitors of Botulinum Neurotoxin Metalloprotease.

Chenbo Wang, Julia Widom, Filip Petronijevic, James C. Burnett, Jonathan E. Nuss, Sina Bavari, Rick Gussio, Peter Wipf

Journal:

Year:

2009

File:

PDF, 33 KB

2009

13

Chromosome structure and gene regulation

Journal:

Physica A: Statistical Mechanics and its Applications

Year:

1997

Language:

english

File:

PDF, 781 KB

english, 1997

14

A genomic code for nucleosome positioning

Segal, Eran, Fondufe-Mittendorf, Yvonne, Chen, Lingyi, Thåström, AnnChristine, Field, Yair, Moore, Irene K., Wang, Ji-Ping Z., Widom, Jonathan

Journal:

Year:

2006

Language:

english

File:

PDF, 952 KB

english, 2006

15

Gene expression divergence in yeast is coupled to evolution of DNA-encoded nucleosome organization

Field, Yair, Fondufe-Mittendorf, Yvonne, Moore, Irene K, Mieczkowski, Piotr, Kaplan, Noam, Lubling, Yaniv, Lieb, Jason D, Widom, Jonathan, Segal, Eran

Journal:

Nature Genetics

Year:

2009

Language:

english

File:

PDF, 880 KB

english, 2009

16

From DNA sequence to transcriptional behaviour: a quantitative approach

Segal, Eran, Widom, Jonathan

Journal:

Nature Reviews Genetics

Year:

2009

Language:

english

File:

PDF, 499 KB

english, 2009

17

Dynamics and function of compact nucleosome arrays

Poirier, Michael G, Oh, Eugene, Tims, Hannah S, Widom, Jonathan

Journal:

Nature Structural and Molecular Biology

Year:

2009

Language:

english

File:

PDF, 701 KB

english, 2009

18

Nucleosome sequence preferences influence in vivo nucleosome organization

Kaplan, Noam, Moore, Irene, Fondufe-Mittendorf, Yvonne, Gossett, Andrea J, Tillo, Desiree, Field, Yair, Hughes, Timothy R, Lieb, Jason D, Widom, Jonathan, Segal, Eran

Journal:

Nature Structural and Molecular Biology

Year:

2010

Language:

english

File:

PDF, 321 KB

english, 2010

19

Nucleosomes facilitate their own invasion

Li, Gu, Widom, Jonathan

Journal:

Nature Structural and Molecular Biology

Year:

2004

Language:

english

File:

PDF, 930 KB

english, 2004

20

Rapid spontaneous accessibility of nucleosomal DNA

Li, Gu, Levitus, Marcia, Bustamante, Carlos, Widom, Jonathan

Journal:

Nature Structural and Molecular Biology

Year:

2004

Language:

english

File:

PDF, 674 KB

english, 2004

21

What controls nucleosome positions?

Eran Segal, Jonathan Widom

Journal:

Trends in Genetics

Year:

2009

Language:

english

File:

PDF, 569 KB

english, 2009

22

A map of nucleosome positions in yeast at base-pair resolution

Brogaard, Kristin, Xi, Liqun, Wang, Ji-Ping, Widom, Jonathan

Journal:

Year:

2012

Language:

english

File:

PDF, 1.19 MB

english, 2012

23

Nucleic acids

Anna Marie Pyle, Jonathan Widom

Journal:

Current Opinion in Structural Biology

Year:

2006

Language:

english

File:

PDF, 67 KB

english, 2006

24

Poly(dA:dT) tracts: major determinants of nucleosome organization

Eran Segal, Jonathan Widom

Journal:

Current Opinion in Structural Biology

Year:

2009

Language:

english

File:

PDF, 522 KB

english, 2009

25

Chromatin structure: Linking structure to function with histone H1

Journal:

Current Biology

Year:

1998

Language:

english

File:

PDF, 75 KB

english, 1998

26

Predicting nucleosome positioning using a duration Hidden Markov Model

Liqun Xi, Yvonne Fondufe-Mittendorf, Lei Xia, Jared Flatow, Jonathan Widom, Ji-Ping Wang

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 722 KB

english, 2010

27

Archaeal histone selection of nucleosome positioning sequences and the procaryotic origin of histone-dependent genome evolution

Kathryn A Bailey, Suzette L Pereira, Jonathan Widom, John N Reeve

Journal:

Journal of Molecular Biology

Year:

2000

Language:

english

File:

PDF, 296 KB

english, 2000

28

Archaeal histone selection of nucleosome positioning sequences and the procaryotic origin of histone-dependent genome evolution

Kathryn A Bailey, Suzette L Pereira, Jonathan Widom, John N Reeve

Journal:

Journal of Molecular Biology

Year:

2000

File:

PDF, 30 KB

2000

29

Science, Prudence, and Politics: The Case of Smoke-Free Indoor Spaces

Rachel Widome, Jonathan M. Samet, Robert A. Hiatt, Douglas A. Luke, C. Tracy Orleans, Prabhu Ponkshe, Andrew Hyland

Journal:

Annals of Epidemiology

Year:

2010

Language:

english

File:

PDF, 290 KB

english, 2010

30

Mechanism of Transcriptional Silencing in Yeast

Lingyi Chen, Jonathan Widom

Journal:

Year:

2005

Language:

english

File:

PDF, 722 KB

english, 2005

31

Spontaneous Access to DNA Target Sites in Folded Chromatin Fibers

Michael G. Poirier, Malte Bussiek, Jörg Langowski, Jonathan Widom

Journal:

Journal of Molecular Biology

Year:

2008

Language:

english

File:

PDF, 1.54 MB

english, 2008

32

Dynamics of Nucleosome Invasion by DNA Binding Proteins

Hannah S. Tims, Kaushik Gurunathan, Marcia Levitus, Jonathan Widom

Journal:

Journal of Molecular Biology

Year:

2011

Language:

english

File:

PDF, 2.59 MB

english, 2011

33

Structural Constraints in Collaborative Competition of Transcription Factors against the Nucleosome

Georgette Moyle-Heyrman, Hannah S. Tims, Jonathan Widom

Journal:

Journal of Molecular Biology

Year:

2011

Language:

english

File:

PDF, 1.07 MB

english, 2011

34

Structure-Based Identification of New High-Affinity Nucleosome Binding Sequences

Federica Battistini, Christopher A. Hunter, Irene K. Moore, Jonathan Widom

Journal:

Journal of Molecular Biology

Year:

2012

Language:

english

File:

PDF, 491 KB

english, 2012

35

Stopped-flow fluorescence resonance energy transfer for analysis of nucleosome dynamics

Hannah S. Tims, Jonathan Widom

Journal:

Year:

2007

Language:

english

File:

PDF, 418 KB

english, 2007

36

The Major Cytoplasmic Histone Acetyltransferase in Yeast: Links to Chromatin Replication and Histone Metabolism

Mark R Parthun, Jonathan Widom, Daniel E Gottschling

Journal:

Year:

1996

Language:

english

File:

PDF, 1.09 MB

english, 1996

37

Spontaneous Sharp Bending of Double-Stranded DNA

Timothy E. Cloutier, Jonathan Widom

Journal:

Year:

2004

Language:

english

File:

PDF, 244 KB

english, 2004

38

Cation-induced toroidal condensation of DNA: Studies with Co3+(NH3)6

Jonathan Widom, Robert L. Baldwin

Journal:

Journal of Molecular Biology

Year:

1980

Language:

english

File:

PDF, 3.07 MB

english, 1980

39

Tests of spool models for DNA packaging in phage lambda

Jonathan Widom, Robert L. Baldwin

Journal:

Journal of Molecular Biology

Year:

1983

Language:

english

File:

PDF, 3.30 MB

english, 1983

40

Archaeal nucleosome positioning in vivo and in vitro is directed by primary sequence motifs

Narasimharao Nalabothula, Liqun Xi, Sucharita Bhattacharyya, Jonathan Widom…

Journal:

Year:

2013

Language:

english

File:

PDF, 667 KB

english, 2013

41

The Genomic Code for Nucleosome Positioning

Widom, Jonathan

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 33 KB

english, 2010

42

Nucleosomes and chromatin

Widom, Jonathan

Journal:

Current Opinion in Structural Biology

Year:

1991

Language:

english

File:

PDF, 664 KB

english, 1991

43

A Locally Convoluted Cluster Model for Nucleosome Positioning Signals in Chemical Maps

Xi, Liqun, Brogaard, Kristin, Zhang, Qingyang, Lindsay, Bruce, Widom, Jonathan, Wang, Ji-Ping

Journal:

Journal of the American Statistical Association

Year:

2014

Language:

english

File:

PDF, 1.11 MB

english, 2014

44

Modeling DNA-Bending in the Nucleosome: Role of AA Periodicity

Prytkova, Tatiana R., Zhu, Xiao, Widom, Jonathan, Schatz, George C.

Journal:

Journal of Physical Chemistry B

Year:

2011

Language:

english

File:

PDF, 3.67 MB

english, 2011

45

Molecular basis of transcriptional silencing in budding yeast

Chen, Lingyi, Widom, Jonathan

Journal:

Biochemistry and Cell Biology

Year:

2004

Language:

english

File:

PDF, 144 KB

english, 2004

46

Contribution of histone sequence preferences to nucleosome organization: proposed definitions and methodology

Noam Kaplan,Timothy R Hughes,Jason D Lieb,Jonathan Widom,Eran Segal

Journal:

Year:

2010

Language:

english

File:

PDF, 596 KB

english, 2010

47

Nucleosome Switches

Schwab, David J., Bruinsma, Robijn F., Rudnick, Joseph, Widom, Jonathan

Journal:

Physical Review Letters

Year:

2008

Language:

english

File:

PDF, 277 KB

english, 2008

48

High-Density Nucleosome Occupancy Map of Human Chromosome 9p21–22 Reveals Chromatin Organization of the Type I Interferon Gene Cluster

Freaney, Jonathan E., Zhang, Quanwei, Yigit, Erbay, Kim, Rebecca, Widom, Jonathan, Wang, Ji-Ping, Horvath, Curt M.

Journal:

Journal of Interferon & Cytokine Research

Year:

2014

Language:

english

File:

PDF, 770 KB

english, 2014

49

In vitro selection of DNAs with an increased propensity to form small circles

Rosanio, Gabriel, Widom, Jonathan, Uhlenbeck, Olke C., Woodson, Sarah

Journal:

Year:

2015

Language:

english

File:

PDF, 1.27 MB

english, 2015

50

Distinct Modes of Regulation by Chromatin Encoded through Nucleosome Positioning Signals

Field, Yair, Kaplan, Noam, Fondufe-Mittendorf, Yvonne, Moore, Irene K., Sharon, Eilon, Lubling, Yaniv, Widom, Jonathan, Segal, Eran, Ohler, Uwe

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 2.09 MB

english, 2008